balance_dataset | Internal functions of scClassifR package |
cell_type | cell_type |
cell_type<- | Setter for cell_type Change cell type for a classifier |
checkCellTypeValidity | Internal functions of scClassifR package |
checkClassifierValidity | Internal functions of scClassifR package |
checkFeaturesValidity | Internal functions of scClassifR package |
checkObjectValidity | Internal functions of scClassifR package |
checkParentValidity | Internal functions of scClassifR package |
checkPThresValidity | Internal functions of scClassifR package |
check_parent_child_coherence | Internal functions of scClassifR package |
check_parent_child_coherence-method | Internal functions of scClassifR package |
classify_cells | Classify cells from multiple models |
classify_cells-method | Classify cells from multiple models |
classify_clust | Internal functions of scClassifR package |
clf | clf |
clf<- | Internal functions of scClassifR package |
construct_tag_vect | Internal functions of scClassifR package |
construct_tag_vect-method | Internal functions of scClassifR package |
default_models | Pretrained classifiers for human cells |
delete_model | Delete model/branch from package |
features | features |
features<- | Internal functions of scClassifR package |
filter_cells | Internal functions of scClassifR package |
filter_cells-method | Internal functions of scClassifR package |
load_models | Internal functions of scClassifR package |
make_prediction | Internal functions of scClassifR package |
parent | parent |
parent<- | Internal functions of scClassifR package |
plant_tree | Plant tree from list of models |
plot_roc_curve | Plot roc curve |
process_parent_clf | Internal functions of scClassifR package |
process_parent_clf-method | Internal functions of scClassifR package |
p_thres | p_thres |
p_thres<- | Setter for predicting probability threshold |
save_new_model | Save a model to the package |
scClassifR | scClassifR class. |
select_features | Internal functions of scClassifR package |
show-method | Show object |
simplify_prediction | Internal functions of scClassifR package |
test_classifier | Testing process. |
test_classifier-method | Testing process. |
test_performance | Internal functions of scClassifR package |
tirosh_mel80_example | A Seurat Object Sample |
train_classifier | Train cell type classifier |
train_classifier-method | Train cell type classifier |
train_func | Internal functions of scClassifR package |
transform_to_zscore | Internal functions of scClassifR package |
verify_parent | Internal functions of scClassifR package |