Pretrained learning models for cell type prediction on single cell RNA-sequencing data


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Documentation for package ‘scClassifR’ version 1.2.0

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balance_dataset Internal functions of scClassifR package
cell_type cell_type
cell_type<- Setter for cell_type Change cell type for a classifier
checkCellTypeValidity Internal functions of scClassifR package
checkClassifierValidity Internal functions of scClassifR package
checkFeaturesValidity Internal functions of scClassifR package
checkObjectValidity Internal functions of scClassifR package
checkParentValidity Internal functions of scClassifR package
checkPThresValidity Internal functions of scClassifR package
check_parent_child_coherence Internal functions of scClassifR package
check_parent_child_coherence-method Internal functions of scClassifR package
classify_cells Classify cells from multiple models
classify_cells-method Classify cells from multiple models
classify_clust Internal functions of scClassifR package
clf clf
clf<- Internal functions of scClassifR package
construct_tag_vect Internal functions of scClassifR package
construct_tag_vect-method Internal functions of scClassifR package
default_models Pretrained classifiers for human cells
delete_model Delete model/branch from package
features features
features<- Internal functions of scClassifR package
filter_cells Internal functions of scClassifR package
filter_cells-method Internal functions of scClassifR package
load_models Internal functions of scClassifR package
make_prediction Internal functions of scClassifR package
parent parent
parent<- Internal functions of scClassifR package
plant_tree Plant tree from list of models
plot_roc_curve Plot roc curve
process_parent_clf Internal functions of scClassifR package
process_parent_clf-method Internal functions of scClassifR package
p_thres p_thres
p_thres<- Setter for predicting probability threshold
save_new_model Save a model to the package
scClassifR scClassifR class.
select_features Internal functions of scClassifR package
show-method Show object
simplify_prediction Internal functions of scClassifR package
test_classifier Testing process.
test_classifier-method Testing process.
test_performance Internal functions of scClassifR package
tirosh_mel80_example A Seurat Object Sample
train_classifier Train cell type classifier
train_classifier-method Train cell type classifier
train_func Internal functions of scClassifR package
transform_to_zscore Internal functions of scClassifR package
verify_parent Internal functions of scClassifR package