Mass Spectrometry Data on ExperimentHub


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Documentation for package ‘MsDataHub’ version 1.8.0

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20171016_POOL_POS_1_105-134.mzML AB Sciex LC-MS data files
20171016_POOL_POS_3_105-134.mzML AB Sciex LC-MS data files
Ai2025 Ai et al (2025) single-cell data
Ai2025_aCMs_report.tsv Ai et al (2025) single-cell data
Ai2025_iCMs_report.tsv Ai et al (2025) single-cell data
benchmarkingDIA DIA benchmarking data
benchmarkingDIA.tsv DIA benchmarking data
cdf MS data in CDF format
contaminatants Contaminant and cRAP databases
cptac CPTAC label-free data
cptac_a_b_c_peptides.txt CPTAC label-free data
cptac_a_b_peptides.txt CPTAC label-free data
cptac_peptides.txt CPTAC label-free data
cRAP Contaminant and cRAP databases
crap Contaminant and cRAP databases
crap_ccp.fasta Contaminant and cRAP databases
crap_gpm.fasta Contaminant and cRAP databases
crap_maxquant.fasta.gz Contaminant and cRAP databases
ko15.CDF MS data in CDF format
MsDataHub All MsDataHub datasets
PestMix1_DDA.mzML Triple TOF SWATH Data
PestMix1_SWATH.mzML Triple TOF SWATH Data
PXD000001 PXD000001 Proteomics Data
Report.Derks2022.plexDIA Derks 2022 plexDIA data
Report.Derks2022.plexDIA.tsv Derks 2022 plexDIA data
sciex AB Sciex LC-MS data files
TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01-20141210.mzid PXD000001 Proteomics Data
TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01-20141210.mzML.gz PXD000001 Proteomics Data
TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01.20141210.mzid PXD000001 Proteomics Data
TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01.20141210.mzML.gz PXD000001 Proteomics Data
TripleTOF Triple TOF SWATH Data
X20171016_POOL_POS_1_105.134.mzML AB Sciex LC-MS data files
X20171016_POOL_POS_3_105.134.mzML AB Sciex LC-MS data files