Differential methylation anlsysis for bisulfite sequencing data

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Documentation for package ‘MethCP’ version 1.15.0

• DESCRIPTION file.
• Package NEWS.

Help Pages

calcLociStat	Calculate the per-cytosine statistics for simple two-group comparisons.
calcLociStatTimeCourse	Calculate the per-cytosine statistics for time-course data.
createBsseqObject	Helper function to read text files and create a bsseq object.
getSigRegion	Obtain the significant DMRs.
MethCP	Class 'MethCP'
MethCP-class	Class 'MethCP'
MethCPFromStat	Create a 'MethCP' object given the per-cytosine based tests.
segmentMethCP	Perform segmentation on a 'MethCP' object.
show-method	The show method