Detection, Characterization and Visualization of Kataegis in Sequencing Data


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Documentation for package ‘katdetectr’ version 1.10.0

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constructKatdetect constructKatdetect
detectKataegis detectKataegis
generateSyntheticData Generate genomic variants with pre-defined kataegis foci.
getGenomicVariants Retrieve genomic variants from KatDetect object.
getGenomicVariants-method Retrieve genomic variants from KatDetect object.
getInfo Retrieve model parameters from a KatDetect object.
getInfo-method Retrieve model parameters from a KatDetect object.
getKataegisFoci Retrieve kateagis foci from a KatDetect object.
getKataegisFoci-method Retrieve kateagis foci from a KatDetect object.
getSegments Retrieve segments from KatDetect a object.
getSegments-method Retrieve segments from KatDetect a object.
KatDetect-class KatDetect-class: KatDetect objects
katdetectr Katdetectr: A package for kataegis detection, characterization and visualization
rainfallPlot Rainfall plot.