flowMatch-package |
Matching cell populations and building meta-clusters and templates from a collection of FC samples. |
Cluster |
Cluster: A class representing a cell population in FC |
Cluster-class |
Cluster: A class representing a cell population in FC |
ClusteredSample |
ClusteredSample: A class representing a clustered FC Sample |
ClusteredSample-class |
ClusteredSample: A class representing a clustered FC Sample |
ClusterMatch |
ClusterMatch: A class representing matching of cluster/meta-clusters across a pair of FC samples/templates |
ClusterMatch-class |
ClusterMatch: A class representing matching of cluster/meta-clusters across a pair of FC samples/templates |
create.template |
Creating a template of a collection of FC samples |
dist.cluster |
Dissimilarity between a pair of clusters |
dist.matrix |
Dissimilarity matrix between each pair of clusters/meta-clusters across a pair of samples/templates |
dist.sample |
Dissimilarity between a pair of clustered FC samples |
dist.template |
Dissimilarity between a pair of FC templates |
flowMatch |
Matching cell populations and building meta-clusters and templates from a collection of FC samples. |
get.center |
Cluster: A class representing a cell population in FC |
get.center-method |
Cluster: A class representing a cell population in FC |
get.center-method |
MetaCluster: An S4 class representing a meta-cluster (collection of biologically similar clusters). |
get.cluster.id |
Cluster: A class representing a cell population in FC |
get.cluster.id-method |
Cluster: A class representing a cell population in FC |
get.clusters |
ClusteredSample: A class representing a clustered FC Sample |
get.clusters-method |
ClusteredSample: A class representing a clustered FC Sample |
get.clusters-method |
MetaCluster: An S4 class representing a meta-cluster (collection of biologically similar clusters). |
get.cov |
Cluster: A class representing a cell population in FC |
get.cov-method |
Cluster: A class representing a cell population in FC |
get.cov-method |
MetaCluster: An S4 class representing a meta-cluster (collection of biologically similar clusters). |
get.dimension |
ClusteredSample: A class representing a clustered FC Sample |
get.dimension-method |
ClusteredSample: A class representing a clustered FC Sample |
get.dimension-method |
Template: An S4 class representing a template of a group of FC Samples. |
get.labels |
ClusteredSample: A class representing a clustered FC Sample |
get.labels-method |
ClusteredSample: A class representing a clustered FC Sample |
get.match12 |
ClusterMatch: A class representing matching of cluster/meta-clusters across a pair of FC samples/templates |
get.match12-method |
ClusterMatch: A class representing matching of cluster/meta-clusters across a pair of FC samples/templates |
get.match21 |
ClusterMatch: A class representing matching of cluster/meta-clusters across a pair of FC samples/templates |
get.match21-method |
ClusterMatch: A class representing matching of cluster/meta-clusters across a pair of FC samples/templates |
get.matching.cost |
ClusterMatch: A class representing matching of cluster/meta-clusters across a pair of FC samples/templates |
get.matching.cost-method |
ClusterMatch: A class representing matching of cluster/meta-clusters across a pair of FC samples/templates |
get.metaClusters |
Template: An S4 class representing a template of a group of FC Samples. |
get.metaClusters-method |
Template: An S4 class representing a template of a group of FC Samples. |
get.num.clusters |
ClusteredSample: A class representing a clustered FC Sample |
get.num.clusters-method |
ClusteredSample: A class representing a clustered FC Sample |
get.num.clusters-method |
MetaCluster: An S4 class representing a meta-cluster (collection of biologically similar clusters). |
get.num.metaclusters |
Template: An S4 class representing a template of a group of FC Samples. |
get.num.metaclusters-method |
Template: An S4 class representing a template of a group of FC Samples. |
get.sample.id |
Cluster: A class representing a cell population in FC |
get.sample.id-method |
Cluster: A class representing a cell population in FC |
get.sample.id-method |
ClusteredSample: A class representing a clustered FC Sample |
get.size |
Cluster: A class representing a cell population in FC |
get.size-method |
Cluster: A class representing a cell population in FC |
get.size-method |
ClusteredSample: A class representing a clustered FC Sample |
get.size-method |
MetaCluster: An S4 class representing a meta-cluster (collection of biologically similar clusters). |
get.size-method |
Template: An S4 class representing a template of a group of FC Samples. |
get.template.id |
Template: An S4 class representing a template of a group of FC Samples. |
get.template.id-method |
Template: An S4 class representing a template of a group of FC Samples. |
get.tree |
Template: An S4 class representing a template of a group of FC Samples. |
get.tree-method |
Template: An S4 class representing a template of a group of FC Samples. |
get.unmatch.penalty |
ClusterMatch: A class representing matching of cluster/meta-clusters across a pair of FC samples/templates |
get.unmatch.penalty-method |
ClusterMatch: A class representing matching of cluster/meta-clusters across a pair of FC samples/templates |
mahalanobis.dist |
Mahanalobis Distance |
match.clusters |
Matching of clusters/meta-clusters across FC samples/templates |
match.clusters.dist |
Matching of clusters/meta-clusters across FC samples/templates |
MetaCluster |
MetaCluster: An S4 class representing a meta-cluster (collection of biologically similar clusters). |
MetaCluster-class |
MetaCluster: An S4 class representing a meta-cluster (collection of biologically similar clusters). |
plot-method |
ClusteredSample: A class representing a clustered FC Sample |
plot-method |
MetaCluster: An S4 class representing a meta-cluster (collection of biologically similar clusters). |
plot-method |
Template: An S4 class representing a template of a group of FC Samples. |
sample.id<- |
Cluster: A class representing a cell population in FC |
sample.id<--method |
Cluster: A class representing a cell population in FC |
show-method |
Cluster: A class representing a cell population in FC |
show-method |
ClusterMatch: A class representing matching of cluster/meta-clusters across a pair of FC samples/templates |
show-method |
ClusteredSample: A class representing a clustered FC Sample |
show-method |
MetaCluster: An S4 class representing a meta-cluster (collection of biologically similar clusters). |
show-method |
Template: An S4 class representing a template of a group of FC Samples. |
summary-method |
Cluster: A class representing a cell population in FC |
summary-method |
ClusterMatch: A class representing matching of cluster/meta-clusters across a pair of FC samples/templates |
summary-method |
ClusteredSample: A class representing a clustered FC Sample |
summary-method |
MetaCluster: An S4 class representing a meta-cluster (collection of biologically similar clusters). |
summary-method |
Template: An S4 class representing a template of a group of FC Samples. |
symmetric.KL |
Symmetrized Kullback-Leibler divergence |
Template |
Template: An S4 class representing a template of a group of FC Samples. |
Template-class |
Template: An S4 class representing a template of a group of FC Samples. |
template.tree |
Plot the hierarchy of samples established while creating a template-tree |
template.tree-method |
Plot the hierarchy of samples established while creating a template-tree |