Automated Cytometry Gating and Annotation


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Documentation for package ‘cytometree’ version 2.0.6

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cytometree-package cytometree: Automated Cytometry Gating and Annotation
Annotation Annotates cell populations found using CytomeTree.
bootstrapCI Bootstrapped Confidence Interval.
CytofTree Binary tree algorithm for mass cytometry data analysis.
CytomeTree Binary tree algorithm for cytometry data analysis.
cytometree cytometree: Automated Cytometry Gating and Annotation
DLBCL Diffuse large B-cell lymphoma data set from the FlowCAP-I challenge.
FmeasureC C++ implementation of the F-measure computation
FmeasureC_no0 C++ implementation of the F-measure computation without the reference class labeled "0"
HIPC HIPC T cell panel data set from HIPC program, patient 1369. The data was analyzed and gated by Stanford.
IMdata Influenza vaccine response dataset
plot_cytopop Plot the cell count for each population using CytomeTree.
plot_graph Plot the binary tree built using CytomeTree.
plot_nodes Plot the distribution of the observed cells at each node of the binary tree built using CytomeTree.
RetrievePops Retrieve cell populations found using Annotation.