bootstrapDist | bootstrapDist |
calGeneticDist | calGeneticDist |
calGeneticDist-method | calGeneticDist |
coCount | RangedSummarizedExperiment object containing the crossover counts across samples for the list of SNP marker intervals |
comapr | 'comapr' package |
combineHapState | combineHapState |
correctGT | correctGT |
countBinState | countBinState |
countCOs | countCOs |
countCOs-method | countCOs |
countGT | countGT |
filterGT | filterGT |
filterGT-method | filterGT |
findDupSamples | findDupSamples |
getAFTracks | getAFTracks |
getCellAFTrack | getCellAFTrack Generates the DataTracks for plotting AF and crossover regions |
getCellCORange | getCellCORange |
getCellDPTrack | getCellDPTrack Generates the DataTrack for plotting DP of a selected cell |
getDistortedMarkers | getDistortedMarkers |
getMeanDPTrack | getMeanDPTrack |
getSNPDensityTrack | getSNPDensityTrack |
parents_geno | Parents' genotype for F1 samples in 'snp_geno' |
perCellChrQC | perCellChrQC |
permuteDist | permuteDist |
perSegChrQC | perSegChrQC |
plotCount | plotCount |
plotCount-method | plotCount |
plotGeneticDist | plotGeneticDist |
plotGTFreq | plotGTFreq |
plotWholeGenome | Plot cumulative genetic distances across the genome |
readColMM | readColMM |
readHapState | readHapState |
snp_geno | Markers by genotype results for a group of samples |
snp_geno_gr | Markers by genotype results for a group of samples |
twoSamples | RangedSummarizedExperiment object containing the Viterbi states SNP markers for samples from two groups. 'colData(twoSamples)' contains the sample group factor. |