Tools for Single-Cell Analysis


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Documentation for package ‘TSCAN’ version 1.46.0

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TSCAN-package TSCAN: Tools for Single-Cell ANalysis
difftest difftest
exprmclust exprmclust
lpsdata Sinlge-cell RNA-seq data for BMDC cells before and after LPS stimulation
mapCellsToEdges Map cells to edges
mapCellsToEdges-method Map cells to edges
orderCells Compute pseudotimes from the MST
orderscore orderscore
perCellEntropy Compute the per-cell entropy
perCellEntropy-method Compute the per-cell entropy
plotmclust plotmclust
preprocess preprocess
quickPseudotime Quick MST-based pseudotime
quickPseudotime-method Quick MST-based pseudotime
reportEdges Report MST edge coordinates
reportEdges-method Report MST edge coordinates
singlegeneplot singlegeneplot
testPseudotime Test for differences along pseudotime
testPseudotime-method Test for differences along pseudotime
TSCAN TSCAN: Tools for Single-Cell ANalysis
TSCANorder TSCANorder
TSCANui TSCANui