High Throughput Sequencing Cell Authentication Toolkit


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Documentation for package ‘seqCAT’ version 1.30.0

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seqCAT-package seqCAT: High Throughput Sequencing Cell Authentication Toolkit
calculate_similarity SNV profile similarity calculations
compare_many Comparisons of many SNV profiles
compare_profiles Binary SNV profile comparisons
create_profile SNV profile creation
create_profiles SNV profile creation
filter_duplicates Variant de-duplication
filter_variants Variant filtering
list_cosmic List COSMIC sample names
list_variants List known variants
plot_heatmap Plot similarity heatmap
plot_impacts Plot SNV impact distribution
plot_variant_list Plot known variants list
read_cosmic Read COSMIC data
read_profile Read SNV profile
read_profiles Read SNV profiles
seqCAT seqCAT: High Throughput Sequencing Cell Authentication Toolkit
test_comparison Overlapping and compared SNVs
test_profile_1 SNV profile 1
test_profile_2 SNV profile 2
test_profile_3 SNV profile 3
test_similarities Collated similarities object
test_variant_list Modified variant list object
write_profile Write SNV profile
write_profiles Write SNV profiles