A single-cell RNAseq Shiny app-package


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Documentation for package ‘scRNAseqApp’ version 1.6.1

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$-method The methods for APPconf-class
$<--method The methods for APPconf-class
APPconf Class '"APPconf"'
APPconf-class Class '"APPconf"'
APPconf-methods The methods for APPconf-class
as.character-method The methods for APPconf-class
as.list-method The methods for APPconf-class
createAppConfig Create a metadata to describe the dataset
createDataSet Create a dataset Create a dataset from a Seurat object. The function will try to find the markers in the Misc data named as 'markers'. The misc data should be output of function 'FindAllMarkers'.
createSeuFromCellRanger load data from cellRanger
createSeuFromMatrix load data from a count matrix
lapply-method The methods for APPconf-class
markers The methods for APPconf-class
markers-method The methods for APPconf-class
scInit Create a scRNAseqApp project
scRNAseqApp scRNAseqApp main function
show-method The methods for APPconf-class
unlist-method The methods for APPconf-class
[-method The methods for APPconf-class
[[-method The methods for APPconf-class
[[<--method The methods for APPconf-class