Get inversion status in predefined regions


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Documentation for package ‘scoreInvHap’ version 1.30.0

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adaptRefs Adapt references to imputed data
certainty scoreInvHapRes instances
certainty-method scoreInvHapRes instances
checkSNPs Check genotype object
classification scoreInvHapRes instances
classification-method scoreInvHapRes instances
classifSNPs Get similarity scores and probability
classifSNPsImpute Get similarity scores and probability
computeScore Compute all similarity scores for a sample
correctAlleleTable Solve genotypes discrepancies
diffscores scoreInvHapRes instances
diffscores-method scoreInvHapRes instances
getAlleleTable Compute the allele table
getGenotypesTable Get genotypes table
getInvStatus Get the inversion status of a sample
hetRefs Heterozygote genotypes in the references
info SNP reference description
inversionGR Inversions' description
maxscores scoreInvHapRes instances
maxscores-method scoreInvHapRes instances
numSNPs scoreInvHapRes instances
numSNPs-method scoreInvHapRes instances
plotCallRate scoreInvHapRes instances
plotCallRate-method scoreInvHapRes instances
plotScores scoreInvHapRes instances
plotScores-method scoreInvHapRes instances
prepareMap Modify feature data from VCF
propSNPs scoreInvHapRes instances
propSNPs-method scoreInvHapRes instances
Refs Genotype frequency in references
scoreInvHap scoreInvHap: package to get inversion status of predefined regions.
scoreInvHapRes scoreInvHapRes instances
scoreInvHapRes-class scoreInvHapRes instances
scoreInvHapRes-methods scoreInvHapRes instances
scores scoreInvHapRes instances
scores-method scoreInvHapRes instances
SNPsR2 R2 between the SNPs and the inversion status