adaptRefs | Adapt references to imputed data |
certainty | scoreInvHapRes instances |
certainty-method | scoreInvHapRes instances |
checkSNPs | Check genotype object |
classification | scoreInvHapRes instances |
classification-method | scoreInvHapRes instances |
classifSNPs | Get similarity scores and probability |
classifSNPsImpute | Get similarity scores and probability |
computeScore | Compute all similarity scores for a sample |
correctAlleleTable | Solve genotypes discrepancies |
diffscores | scoreInvHapRes instances |
diffscores-method | scoreInvHapRes instances |
getAlleleTable | Compute the allele table |
getGenotypesTable | Get genotypes table |
getInvStatus | Get the inversion status of a sample |
hetRefs | Heterozygote genotypes in the references |
info | SNP reference description |
inversionGR | Inversions' description |
maxscores | scoreInvHapRes instances |
maxscores-method | scoreInvHapRes instances |
numSNPs | scoreInvHapRes instances |
numSNPs-method | scoreInvHapRes instances |
plotCallRate | scoreInvHapRes instances |
plotCallRate-method | scoreInvHapRes instances |
plotScores | scoreInvHapRes instances |
plotScores-method | scoreInvHapRes instances |
prepareMap | Modify feature data from VCF |
propSNPs | scoreInvHapRes instances |
propSNPs-method | scoreInvHapRes instances |
Refs | Genotype frequency in references |
scoreInvHap | scoreInvHap: package to get inversion status of predefined regions. |
scoreInvHapRes | scoreInvHapRes instances |
scoreInvHapRes-class | scoreInvHapRes instances |
scoreInvHapRes-methods | scoreInvHapRes instances |
scores | scoreInvHapRes instances |
scores-method | scoreInvHapRes instances |
SNPsR2 | R2 between the SNPs and the inversion status |