AllCloseByRegions |
Extract clusters of RNA editing sites located closely in genomic regions. |
AllCoeditedRegions |
Extracts contiguous co-edited genomic regions from input genomic regions . |
AnnotateResults |
Add Annotations to site-specific or region-based analysis results. |
CreateEditingTable |
Convert RNA editing matrix into a special data frame with class 'rnaEdit_df'. |
rnaedit_df |
Example breast cancer RNA editing dataset. |
SummarizeAllRegions |
Summarize RNA editing levels from multiple sites in regions. |
TestAssociations |
Test associations between phenotype and RNA editing levels. |
TransformToGR |
Transform gene symbols or region ranges into GRanges object. |
t_rnaedit_df |
Transposed breast cancer example dataset. |