Statistical analysis of RNA editing sites and hyper-editing regions


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Documentation for package ‘rnaEditr’ version 1.18.0

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AllCloseByRegions Extract clusters of RNA editing sites located closely in genomic regions.
AllCoeditedRegions Extracts contiguous co-edited genomic regions from input genomic regions .
AnnotateResults Add Annotations to site-specific or region-based analysis results.
CreateEditingTable Convert RNA editing matrix into a special data frame with class 'rnaEdit_df'.
rnaedit_df Example breast cancer RNA editing dataset.
SummarizeAllRegions Summarize RNA editing levels from multiple sites in regions.
TestAssociations Test associations between phenotype and RNA editing levels.
TransformToGR Transform gene symbols or region ranges into GRanges object.
t_rnaedit_df Transposed breast cancer example dataset.