pathview-package |
Pathway based data integration and visualization |
bods |
Mapping data on KEGG species code and corresponding Bioconductor gene annotation package |
col.key |
Code molecular data as pseudo colors on the pathway graph |
combineKEGGnodes |
Special treatment of nodes or edges for KEGG pathway rendering |
cpd.accs |
Mapping data between compound or gene IDs and KEGG accessions |
cpd.names |
Mapping data between compound or gene IDs and KEGG accessions |
cpd.simtypes |
Mapping data between compound or gene IDs and KEGG accessions |
cpd2kegg |
Mapping between compound IDs and KEGG accessions |
cpdidmap |
Mapping between compound IDs and KEGG accessions |
cpdkegg2name |
Mapping between compound IDs and KEGG accessions |
cpdname2kegg |
Mapping between compound IDs and KEGG accessions |
demo.paths |
Data for demo purpose |
download.kegg |
Download KEGG pathway graphs and associated KGML data |
eg2id |
Mapping between different gene ID and annotation types |
gene.idtype.bods |
Mapping data between compound or gene IDs and KEGG accessions |
gene.idtype.list |
Mapping data between compound or gene IDs and KEGG accessions |
geneannot.map |
Mapping between different gene ID and annotation types |
gse16873.d |
Data for demo purpose |
id2eg |
Mapping between different gene ID and annotation types |
kegg.met |
Mapping data between compound or gene IDs and KEGG accessions |
kegg.species.code |
Mapping species name to KEGG code |
keggview.graph |
Pathway based data integration and visualization |
keggview.native |
Pathway based data integration and visualization |
ko.ids |
Mapping data between compound or gene IDs and KEGG accessions |
korg |
Mapping data on KEGG species code and corresponding Bioconductor gene annotation package |
mol.sum |
Mapping and summation of molecular data onto standard IDs |
node.color |
Code molecular data as pseudo colors on the pathway graph |
node.info |
Extract node information from KEGG pathway |
node.map |
Map molecular data onto KEGG pathway nodes |
paths.hsa |
Data for demo purpose |
pathview |
Pathway based data integration and visualization |
reaction2edge |
Special treatment of nodes or edges for KEGG pathway rendering |
rn.list |
Mapping data between compound or gene IDs and KEGG accessions |
sim.mol.data |
Simulate molecular data for pathview experiment |
strfit |
Wrap or break strings into lines of specified width |
wordwrap |
Wrap or break strings into lines of specified width |