Data employed in the vignette of the GSVA package


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Documentation for package ‘GSVAdata’ version 1.44.0

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GSVAdata-package Data employed in the vignette of the GSVA package.
annotEntrez220212 Annotation data on gene length and G+C content from NCBI
brainTxDbSets Gene sets signatures of brain cell types
c2BroadSets C2 collection of canonical pathways from MSigDB 3.0
commonPickrellHuang Matching microarray and RNA-seq data from human lymphoblastoid cell lines
gbm_eset Glioblastoma Multiforme (GBM) Data by Verhaak et al. (2010)
gbm_VerhaakEtAl Glioblastoma Multiforme (GBM) Data by Verhaak et al. (2010)
genderGenesEntrez Entrez genes with documented sex-specific expression
geneExpCostaEtAl2021 RNA-seq Data by Costa et al. (2021)
geneprotExpCostaEtAl2021 RNA-seq Data by Costa et al. (2021)
GSVAdata Data employed in the vignette of the GSVA package.
huangArrayRMAnoBatchCommon_eset Matching microarray and RNA-seq data from human lymphoblastoid cell lines
leukemia Leukemia Data by Armstrong et al. (2002) from the Broad Institute
leukemia_eset Leukemia Data by Armstrong et al. (2002) from the Broad Institute
msYgenesEntrez Entrez genes with documented sex-specific expression
pickrellCountsArgonneCQNcommon_eset Matching microarray and RNA-seq data from human lymphoblastoid cell lines
pickrellCountsYaleCQNcommon_eset Matching microarray and RNA-seq data from human lymphoblastoid cell lines
protExpCostaEtAl2021 RNA-seq Data by Costa et al. (2021)
XiEgenesEntrez Entrez genes with documented sex-specific expression