ExCluster |
ExCluster is the main function in this package, which clusters exon bins within each gene to determine signficiantly differentially expressed exon clusters. |
GFF_convert |
Flatten GTF files into GFF format |
GRangesFromExClustResults |
Converts ExCluster results data table to GRanges format. |
plotExonlog2FC |
The plotExonlog2FC function plots exon log2FC means and variances for significantly differentially expressed genes in ExCluster results. |
processCounts |
Counts reads per exon bin for each BAM file, using GFF exon annotations - also normalizes library sizes. |